Pathway Computation in Models Derived from Bio-science Text Sources

Troels Andreasen; Henrik Bulskov Styltsvig; Per Anker Jensen; Jørgen Fischer Nilsson

doi:10.1007/978-3-319-60438-1_42

Pathway Computation in Models Derived from Bio-science Text Sources

Troels Andreasen, Henrik Bulskov Styltsvig, Per Anker Jensen, Jørgen Fischer Nilsson

Department of Management, Society and Communication

Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › peer review

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Abstract

This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.

Originalsprog	Engelsk
Titel	Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings : Proceedings of the 23rd International Symposium, ISMIS 2017
Redaktører	Marzena Kryszkiewicz , Annalisa Appice, Dominik Ślęzak, Henryk Rybinski, Andrzej Skowron, Zbigniew W. Raś
Antal sider	11
Vol/bind	10352
Forlag	Springer
Publikationsdato	2017
Sider	424-434
ISBN (Trykt)	9783319604374
ISBN (Elektronisk)	9783319604381
DOI	https://doi.org/10.1007/978-3-319-60438-1_42
Status	Udgivet - 2017
Begivenhed	The 23rd International Symposium on Methodologies for Intelligent Systems. ISMIS 2017 - Warsaw University of Technology, Warsaw, Polen Varighed: 26 jun. 2017 → 29 jun. 2017 Konferencens nummer: 23 http://ismis2017.ii.pw.edu.pl/

Konference

Konference	The 23rd International Symposium on Methodologies for Intelligent Systems. ISMIS 2017
Nummer	23
Lokation	Warsaw University of Technology
Land/Område	Polen
By	Warsaw
Periode	26/06/2017 → 29/06/2017
Internetadresse	http://ismis2017.ii.pw.edu.pl/

Navn	Lecture Notes in Computer Science
Vol/bind	10352
ISSN	0302-9743

Emneord

Semantic text processing in bio-informatics
Bio-models using natural logic and semantic graphs
Querying and pathway computation

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Citationsformater

Andreasen, T., Styltsvig, H. B., Jensen, P. A., & Nilsson, J. F. (2017). Pathway Computation in Models Derived from Bio-science Text Sources. I M. Kryszkiewicz , A. Appice, D. Ślęzak, H. Rybinski, A. Skowron, & Z. W. Raś (red.), Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings: Proceedings of the 23rd International Symposium, ISMIS 2017 (Bind 10352, s. 424-434). Springer. https://doi.org/10.1007/978-3-319-60438-1_42

Andreasen, Troels ; Styltsvig, Henrik Bulskov ; Jensen, Per Anker et al. / Pathway Computation in Models Derived from Bio-science Text Sources. Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings: Proceedings of the 23rd International Symposium, ISMIS 2017. red. / Marzena Kryszkiewicz ; Annalisa Appice ; Dominik Ślęzak ; Henryk Rybinski ; Andrzej Skowron ; Zbigniew W. Raś. Bind 10352 Springer, 2017. s. 424-434 (Lecture Notes in Computer Science, Bind 10352).

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title = "Pathway Computation in Models Derived from Bio-science Text Sources",

abstract = "This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.",

keywords = "Semantic text processing in bio-informatics, Bio-models using natural logic and semantic graphs, Querying and pathway computation, Semantic text processing in bio-informatics, Bio-models using natural logic and semantic graphs, Querying and pathway computation",

author = "Troels Andreasen and Styltsvig, {Henrik Bulskov} and Jensen, {Per Anker} and Nilsson, {J{\o}rgen Fischer}",

year = "2017",

doi = "10.1007/978-3-319-60438-1_42",

language = "English",

isbn = "9783319604374",

volume = "10352",

series = "Lecture Notes in Computer Science",

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booktitle = "Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings",

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note = "The 23rd International Symposium on Methodologies for Intelligent Systems. ISMIS 2017 ; Conference date: 26-06-2017 Through 29-06-2017",

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Andreasen, T, Styltsvig, HB, Jensen, PA & Nilsson, JF 2017, Pathway Computation in Models Derived from Bio-science Text Sources. i M Kryszkiewicz , A Appice, D Ślęzak, H Rybinski, A Skowron & ZW Raś (red), Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings: Proceedings of the 23rd International Symposium, ISMIS 2017. bind 10352, Springer, Lecture Notes in Computer Science, bind 10352, s. 424-434, The 23rd International Symposium on Methodologies for Intelligent Systems. ISMIS 2017, Warsaw, Polen, 26/06/2017. https://doi.org/10.1007/978-3-319-60438-1_42

Pathway Computation in Models Derived from Bio-science Text Sources. / Andreasen, Troels; Styltsvig, Henrik Bulskov; Jensen, Per Anker et al.
Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings: Proceedings of the 23rd International Symposium, ISMIS 2017. red. / Marzena Kryszkiewicz ; Annalisa Appice; Dominik Ślęzak; Henryk Rybinski; Andrzej Skowron; Zbigniew W. Raś. Bind 10352 Springer, 2017. s. 424-434 (Lecture Notes in Computer Science, Bind 10352).

Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › peer review

TY - GEN

T1 - Pathway Computation in Models Derived from Bio-science Text Sources

AU - Andreasen, Troels

AU - Styltsvig, Henrik Bulskov

AU - Jensen, Per Anker

AU - Nilsson, Jørgen Fischer

N1 - Conference code: 23

PY - 2017

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N2 - This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.

AB - This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.

KW - Semantic text processing in bio-informatics

KW - Bio-models using natural logic and semantic graphs

KW - Querying and pathway computation

KW - Semantic text processing in bio-informatics

KW - Bio-models using natural logic and semantic graphs

KW - Querying and pathway computation

U2 - 10.1007/978-3-319-60438-1_42

DO - 10.1007/978-3-319-60438-1_42

M3 - Article in proceedings

SN - 9783319604374

VL - 10352

T3 - Lecture Notes in Computer Science

SP - 424

EP - 434

BT - Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings

A2 - Kryszkiewicz , Marzena

A2 - Appice, Annalisa

A2 - Ślęzak, Dominik

A2 - Rybinski, Henryk

A2 - Skowron, Andrzej

A2 - Raś, Zbigniew W.

PB - Springer

T2 - The 23rd International Symposium on Methodologies for Intelligent Systems. ISMIS 2017

Y2 - 26 June 2017 through 29 June 2017

ER -

Andreasen T, Styltsvig HB, Jensen PA, Nilsson JF. Pathway Computation in Models Derived from Bio-science Text Sources. I Kryszkiewicz M, Appice A, Ślęzak D, Rybinski H, Skowron A, Raś ZW, red., Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Proceedings: Proceedings of the 23rd International Symposium, ISMIS 2017. Bind 10352. Springer. 2017. s. 424-434. (Lecture Notes in Computer Science, Bind 10352). doi: 10.1007/978-3-319-60438-1_42